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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9876781 1 rs9809843 chr3:48434398 TREX1 chr3:48501186-48509043:+ -0.28 -4.38 3.02E-5 Longevity
THYM cis rs9876781 1 rs9812647 chr3:48448914 TREX1 chr3:48501186-48509043:+ 0.3 4.57 1.48E-5 Longevity
THYM cis rs10935120 1 rs9813774 chr3:134227100 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs9813774 chr3:134227100 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs9814567 chr3:134218557 ANAPC13 chr3:134196547-134204865:- -0.59 -8.13 1.58E-12 Height
THYM cis rs10935120 1 rs9814567 chr3:134218557 CEP63 chr3:134204575-134293852:+ -0.41 -5.87 6.33E-8 Height
THYM cis rs9876781 1 rs9815103 chr3:48414215 TREX1 chr3:48501186-48509043:+ -0.28 -4.38 3.02E-5 Longevity
THYM cis rs9815354 1 rs9815354 chr3:41912651 ULK4 chr3:41288091-42003660:- 0.95 9.28 5.58E-15 Diastolic blood pressure
THYM cis rs9876781 1 rs9817615 chr3:48470756 TREX1 chr3:48501186-48509043:+ -0.29 -4.26 4.8E-5 Longevity
THYM cis rs9815354 1 rs9818169 chr3:41860599 ULK4 chr3:41288091-42003660:- 1 10.81 3.16E-18 Diastolic blood pressure
THYM cis rs10935120 1 rs9819532 chr3:134288644 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs9819532 chr3:134288644 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs9815354 1 rs9820192 chr3:41889281 ULK4 chr3:41288091-42003660:- 1.02 11.47 1.22E-19 Diastolic blood pressure
THYM cis rs9815354 1 rs9823254 chr3:41894768 ULK4 chr3:41288091-42003660:- 0.95 9.28 5.58E-15 Diastolic blood pressure
THYM cis rs9815354 1 rs9824731 chr3:41889698 ULK4 chr3:41288091-42003660:- 0.96 9.51 1.88E-15 Diastolic blood pressure